I went back and deleted wordpress entirely from the website. I then reinstalled Wordpress, then went to manage themes and installed Socrates.zip through the preferred method.
I then used filezilla and discovered that Socrates was installed in the public html directory not the themes directory. The problem I listed before still existed. I then used filezilla to place Socrates in the Themes directory.
Either way I still see:
Warning: opendir(../wp-content/themes/socrates/header-images/uploads) [function.opendir]: failed to open dir: No such file or directory in /home/gedco1/public_html/customer-iq/wp-content/themes/socrates/functions.php on line 2064